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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ATAC-seq
46
total RNA-seq
41
WGBS
35
single cell RNA-seq
32
ChIP-seq
22
snATAC-seq
Assay category
95
DNA accessibility
81
Transcription
41
DNA methylation
32
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
92
bigWig
73
fastq
72
bam
66
bed narrowPeak
26
tsv
14
bigBed narrowPeak
1
bed bed3+
1
csv
1
txt
Organism
249
Homo sapiens
Biosample type
207
primary cell
42
tissue
Organ
152
pancreas
141
epithelium
40
liver
2
musculature of body
Project
134
HPAP
115
AMP
Genome assembly (visualization)
93
hg19
72
GRCh38
Lab
134
Klaus Kaestner, Upenn
75
AMP-T2D consortium
40
Karen Mohlke, UNC
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
month_released!
May, 2020
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
249 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic ductal cell
4
4
13
pancreatic acinar cell
7
2
8
+ See 2 more…
tissue
liver
20
20
skeletal muscle tissue
1
1
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