Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
502
ChIP-seq
46
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
502
DNA binding
Target of assay
338
transcription factor
85
control
82
recombinant protein
76
histone modification
75
histone
58
RNA binding protein
42
broad histone mark
33
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
May, 2020
49
November, 2018
48
August, 2017
22
August, 2021
5
October, 2019
Available data
460
bam
452
fastq
405
bigWig
386
bed narrowPeak
352
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
36
tagAlign
6
bed bed3+
3
tar
Organism
502
Homo sapiens
Biosample type
378
cell line
105
tissue
15
in vitro differentiated cells
4
primary cell
Organ
502
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
502
AMP
Genome assembly (visualization)
402
hg19
341
GRCh38
Lab
484
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
May, 2020
BIOSAMPLE
ASSAY
502 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
95
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
Download