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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
341
ChIP-seq
16
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
341
DNA binding
19
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
51
RNA binding protein
51
histone modification
50
histone
28
broad histone mark
22
narrow histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
May, 2020
52
November, 2018
50
December, 2017
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
369
bam
366
bigWig
348
bed narrowPeak
343
fastq
326
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
19
tsv
12
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
369
Homo sapiens
Biosample type
268
cell line
76
tissue
14
in vitro differentiated cells
11
primary cell
Organ
635
pancreas
566
connective tissue
424
adipose tissue
369
liver
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
369
AMP
Genome assembly (visualization)
455
hg19
369
GRCh38
Lab
369
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
month_released!
May, 2020
BIOSAMPLE
ASSAY
369 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
261
5
1
1
tissue
liver
56
4
2
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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