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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
20
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
20
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
Date released
386
February, 2021
17
August, 2017
12
July, 2019
5
October, 2018
2
October, 2019
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
Available data
443
bam
426
bigWig
401
tsv
44
fastq
14
bed narrowPeak
10
bigBed narrowPeak
9
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
426
Homo sapiens
Biosample type
424
tissue
2
primary cell
Organ
623
pancreas
570
connective tissue
452
liver
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
426
AMP
Genome assembly (visualization)
424
hg19
423
GRCh38
Lab
426
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
May, 2020
BIOSAMPLE
ASSAY
426 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
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