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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
44
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
60
Transcription
44
DNA binding
29
DNA accessibility
Target of assay
88
histone
88
histone modification
broad histone mark
44
narrow histone mark
Date released
109
May, 2021
May, 2020
23
February, 2023
16
January, 2021
7
March, 2020
Available data
97
bam
97
bigWig
53
tsv
44
bed narrowPeak
40
tagAlign
Organism
155
Homo sapiens
Biosample type
115
primary cell
31
tissue
9
cell line
Organ
34
pancreas
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3519
AMP
324
HPAP
155
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
147
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
May, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
155 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
51
40
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
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