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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
155
DNA binding
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
1
August, 2018
Available data
158
bam
127
bed narrowPeak
126
fastq
122
bigWig
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
208
Homo sapiens
Biosample type
1509
tissue
530
cell line
501
primary cell
208
in vitro differentiated cells
8
stem cell
Organ
88
connective tissue
23
embryo
19
epithelium
15
liver
1
adipose tissue
Project
208
AMP
Genome assembly (visualization)
160
hg19
133
GRCh38
4
hg18
Lab
201
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
21
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2021
assay_slims!
Transcription
BIOSAMPLE
ASSAY
208 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
8
1
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
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