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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
snATAC-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
Assay category
29
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
18
February, 2023
16
January, 2021
3
March, 2020
Available data
3
bam
3
bed narrowPeak
3
bigWig
Organism
37
Homo sapiens
Biosample type
23
tissue
8
primary cell
6
cell line
Organ
24
pancreas
8
blood
8
bodily fluid
1
epithelium
Project
2513
AMP
232
HPAP
47
KPMP
37
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
34
Kyle Gaulton, UCSD
3
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2021
assay_title!
total RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
37 results
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Clear Filters
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
tissue
islet of Langerhans
6
11
2
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
1
2
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