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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
whole genome sequencing assay
Assay category
16
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
33
August, 2021
2
March, 2019
Available data
12
bed narrowPeak
12
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
Organism
35
Homo sapiens
Biosample type
31
cell line
4
tissue
Organ
28
liver
4
pancreas
2
kidney
Project
35
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
3315
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
108
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
May, 2021
assay_title!
whole genome sequencing assay
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
cell line
HepG2
16
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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