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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1706
ChIP-seq
1345
total RNA-seq
497
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
40
pCHi-C
34
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
2
DNA methylation
Date released
18
July, 2019
2
August, 2017
Available data
19
bed bedMethyl
bigBed bedMethyl
18
bam
18
bigWig
18
tsv
4
fastq
Organism
20
Homo sapiens
Biosample type
18
tissue
2
primary cell
Organ
4
brain
4
musculature of body
3
adipose tissue
3
connective tissue
3
liver
2
pancreas
1
heart
1
kidney
Project
20
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
20
AMP-T2D consortium
month_released!
May, 2021
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
20 results
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small RNA-seq
RRBS
tissue
skeletal muscle tissue
1
2
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
+ See 9 more…
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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