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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
72
total RNA-seq
60
ChIP-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
5
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
90
DNA accessibility
72
Transcription
60
DNA binding
49
DNA methylation
5
3D chromatin structure
Target of assay
50
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
36
August, 2017
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
114
fastq
80
zippedFastqFolder
67
bam
26
bed narrowPeak
12
bigWig
11
tsv
10
tagAlign
7
bed broadPeak
6
txt
4
bedpe bed3+
4
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
288
Homo sapiens
Biosample type
151
primary cell
118
tissue
21
cell line
Organ
290
pancreas
260
liver
210
epithelium
149
kidney
127
heart
117
connective tissue
92
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
139
HPAP
123
AMP
28
T1D
Genome assembly (visualization)
612
hg19
GRCh38
Lab
139
Klaus Kaestner, Upenn
86
AMP-T2D consortium
50
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
13
inconsistent ontology term
1
audit script error
month_released!
May, 2021
October, 2022
assembly!
GRCh38
BIOSAMPLE
ASSAY
290 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
pancreatic beta cell
13
11
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
36
18
25
7
4
3
1
1
pancreas
3
4
1
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
2
2
6
1
2
1
Panc1
7
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