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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
total RNA-seq
18
snATAC-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
ChIP-seq
2
HiChIP
Assay category
48
Transcription
29
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
May, 2021
41
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
43
bam
43
bigWig
41
tsv
2
bed narrowPeak
Organism
84
Homo sapiens
Biosample type
49
primary cell
30
tissue
5
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
Project
3750
AMP
324
HPAP
84
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
80
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
May, 2021
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 19 more…
tissue
islet of Langerhans
7
6
11
2
pancreas
4
cell line
EndoC_BH1
3
2
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