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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1242
total RNA-seq
1223
ChIP-seq
445
ATAC-seq
311
single cell RNA-seq
210
DNase-seq
87
RNA microarray
63
snATAC-seq
34
pCHi-C
33
WGBS
30
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
33
DNA methylation
Date released
12
July, 2019
9
August, 2017
6
February, 2021
6
November, 2018
Available data
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
16
fastq
6
tsv
Organism
33
Homo sapiens
Biosample type
27
tissue
6
primary cell
cell line
Organ
10
pancreas
8
heart
6
adipose tissue
6
connective tissue
6
epithelium
4
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
27
AMP
6
HPAP
Genome assembly (visualization)
16
GRCh38
Lab
27
AMP-T2D consortium
6
Klaus Kaestner, Upenn
month_released!
May, 2021
biosample_type!
cell line
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
33 results
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WGBS
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
primary cell
pancreatic alpha cell
6
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