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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
total RNA-seq
187
ChIP-seq
133
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
7
DNase-seq
7
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
409
Transcription
187
DNA binding
153
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
131
histone
131
histone modification
68
broad histone mark
63
narrow histone mark
41
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
55
February, 2023
53
October, 2018
May, 2021
39
April, 2018
39
November, 2019
19
September, 2020
11
September, 2017
9
March, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
February, 2021
6
July, 2019
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
August, 2018
3
October, 2019
3
October, 2022
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
587
bam
529
bigWig
471
fastq
347
tsv
191
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
3
cool
1
bedpe
Organism
807
Homo sapiens
Biosample type
468
tissue
346
primary cell
cell line
Organ
814
pancreas
682
connective tissue
491
adipose tissue
440
epithelium
390
liver
335
kidney
324
heart
286
brain
170
vasculature
164
blood vessel
158
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
27
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
632
AMP
152
HPAP
30
T1D
Genome assembly (visualization)
562
hg19
542
GRCh38
Lab
600
AMP-T2D consortium
152
Klaus Kaestner, Upenn
50
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
biosample_type!
cell line
BIOSAMPLE
ASSAY
814 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
248
50
58
7
1
3
4
1
1
body of pancreas
3
35
4
2
4
2
pancreas
1
16
2
4
2
1
1
1
1
endocrine pancreas
16
primary cell
pancreatic alpha cell
52
13
35
12
31
1
pancreatic beta cell
21
13
23
12
16
1
pancreatic acinar cell
4
8
9
12
1
pancreatic ductal cell
4
13
4
10
pancreatic endocrine cell
23
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