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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
9
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
69
Transcription
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
47
September, 2023
10
February, 2023
9
April, 2020
7
March, 2020
4
March, 2023
May, 2021
Available data
5
bam
5
bigWig
3
bed narrowPeak
2
tsv
Organism
73
Homo sapiens
Biosample type
primary cell
65
tissue
10
cell line
2
stem cell
Organ
47
kidney
12
pancreas
9
lung
3
epithelium
Project
AMP
47
KPMP
17
T1D
9
LungMap
4
community
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
47
KPMP
10
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
7
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
3
inconsistent ontology term
month_released!
May, 2021
biosample_type!
primary cell
assay_slims!
DNA accessibility
award.project!
AMP
BIOSAMPLE
ASSAY
77 results
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single cell RNA-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
islet of Langerhans
7
2
lung
9
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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