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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
363
ChIP-seq
Assay category
363
DNA binding
Target of assay
743
histone modification
742
histone
480
transcription factor
378
narrow histone mark
363
broad histone mark
292
control
98
RNA binding protein
82
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
93
August, 2017
56
May, 2019
50
November, 2017
43
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
15
December, 2017
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
4
January, 2019
Available data
303
bigWig
302
bed narrowPeak
272
bam
221
bigBed narrowPeak
96
tagAlign
85
fastq
28
bed broadPeak
11
bed bed3+
8
bigBed broadPeak
Organism
359
Homo sapiens
Biosample type
303
tissue
primary cell
46
in vitro differentiated cells
13
cell line
1
stem cell
Organ
70
brain
57
heart
45
pancreas
41
liver
40
connective tissue
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
10
kidney
7
epithelium
4
embryo
4
spleen
Project
363
AMP
Genome assembly (visualization)
290
GRCh38
247
hg19
Lab
342
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
biosample_type!
primary cell
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
363 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
in vitro differentiated cells
adipocyte
20
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
definitive endodermal cell
2
+ See 5 more…
cell line
HepG2
9
Panc1
4
stem cell
hESC
1
See all biosamples
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