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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
741
ChIP-seq
119
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
4
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
741
DNA binding
119
Transcription
42
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
446
transcription factor
145
control
145
histone modification
144
histone
84
RNA binding protein
82
recombinant protein
81
broad histone mark
62
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
229
August, 2017
87
November, 2018
81
December, 2017
58
October, 2018
35
December, 2018
30
January, 2019
26
February, 2018
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
4
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2621
bam
2397
bigWig
1502
bed narrowPeak
1197
tsv
933
bigBed narrowPeak
922
fastq
292
tagAlign
273
bed broadPeak
236
bigBed broadPeak
233
bed bed3+
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
915
Homo sapiens
Biosample type
427
cell line
primary cell
377
tissue
114
in vitro differentiated cells
4
stem cell
Organ
465
liver
213
pancreas
98
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
embryo
24
spleen
19
epithelium
12
brain
2
musculature of body
Project
922
AMP
Genome assembly (visualization)
763
hg19
703
GRCh38
4
hg18
Lab
896
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
Audit category:
44
missing controlled_by
Audit category:
48
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
May, 2021
biosample_type!
primary cell
organ_slims!
embryo
BIOSAMPLE
ASSAY
922 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2
360
5
1
1
GM12878
60
tissue
islet of Langerhans
28
103
20
1
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 8 more…
in vitro differentiated cells
adipocyte
53
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
Posterior foregut
5
1
+ See 5 more…
stem cell
hESC
3
1
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