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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
606
ChIP-seq
123
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
606
DNA binding
123
Transcription
42
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
300
November, 2017
164
August, 2017
87
November, 2018
63
December, 2017
42
October, 2018
35
December, 2018
24
May, 2022
23
February, 2018
23
January, 2019
10
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2075
bam
1787
bigWig
1209
tsv
883
bed narrowPeak
792
fastq
589
bigBed narrowPeak
224
bed broadPeak
222
bigBed broadPeak
214
bed bed3+
161
txt
70
tagAlign
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
791
Homo sapiens
Biosample type
411
cell line
primary cell
303
tissue
76
in vitro differentiated cells
2
stem cell
Organ
420
liver
171
pancreas
72
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
18
spleen
15
embryo
5
brain
5
epithelium
2
musculature of body
Project
792
AMP
Genome assembly (visualization)
627
hg19
569
GRCh38
5
hg18
Lab
766
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
2
inconsistent ontology term
Audit category:
35
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
May, 2021
biosample_type!
primary cell
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
792 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2
345
5
1
1
GM12878
59
tissue
islet of Langerhans
14
103
20
1
1
liver
54
2
1
1
body of pancreas
17
4
2
2
spleen
14
1
1
2
omental fat pad
11
1
1
+ See 8 more…
in vitro differentiated cells
adipocyte
28
1
pancreatic endoderm
8
4
1
definitive endodermal cell
4
2
1
primitive gut cell
4
2
1
Posterior foregut
3
1
+ See 7 more…
stem cell
hESC
1
1
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