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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
387
ChIP-seq
Assay category
387
DNA binding
Target of assay
758
histone modification
757
histone
488
transcription factor
387
narrow histone mark
369
broad histone mark
302
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
15
May, 2024
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
326
bigWig
323
bed narrowPeak
300
bam
126
tagAlign
123
bigBed narrowPeak
70
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
385
Homo sapiens
Biosample type
324
tissue
primary cell
44
in vitro differentiated cells
18
cell line
1
stem cell
Organ
114
brain
58
liver
40
pancreas
38
heart
29
connective tissue
18
blood vessel
18
vasculature
15
limb
12
adipose tissue
12
epithelium
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
384
AMP
3
T1D
Genome assembly (visualization)
306
GRCh38
297
hg19
Lab
370
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
May, 2021
July, 2018
biosample_type!
primary cell
BIOSAMPLE
ASSAY
387 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
16
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
+ See 6 more…
cell line
HepG2
9
EndoC_BH1
5
Panc1
3
GM12878
1
stem cell
hESC
1
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