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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
37
total RNA-seq
35
ChIP-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
39
Transcription
37
DNA accessibility
35
DNA binding
4
3D chromatin structure
Target of assay
26
histone
26
histone modification
15
broad histone mark
11
narrow histone mark
9
control
Date released
May, 2021
42
August, 2021
26
February, 2021
16
February, 2023
14
August, 2017
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
206
bam
170
bigWig
fastq
127
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
121
Homo sapiens
Biosample type
2320
tissue
473
primary cell
214
cell line
121
in vitro differentiated cells
6
stem cell
Organ
41
connective tissue
Project
121
AMP
Genome assembly (visualization)
90
hg19
63
GRCh38
Lab
114
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
43
inconsistent ontology term
2
audit script error
month_released!
May, 2021
files.file_type!
fastq
BIOSAMPLE
ASSAY
121 results
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ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
8
5
14
1
cardiac precursors (cardiac muscle cell)
1
19
1
cardiomyocytes (cardiac muscle cell)
1
2
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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