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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
single cell RNA-seq
2
small RNA-seq
Assay category
381
Transcription
275
DNA accessibility
158
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
May, 2021
48
July, 2018
47
May, 2020
43
April, 2018
33
May, 2022
27
September, 2018
18
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
248
fastq
200
bam
200
bigWig
200
tsv
52
zippedFastqFolder
2
csv
Organism
381
Homo sapiens
Biosample type
1188
tissue
381
primary cell
111
cell line
54
in vitro differentiated cells
2
stem cell
Organ
163
epithelium
155
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
177
HPAP
159
AMP
45
T1D
Genome assembly (visualization)
200
GRCh38
200
hg19
Lab
177
Klaus Kaestner, Upenn
159
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
month_released!
May, 2021
BIOSAMPLE
ASSAY
381 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
exocrine cell
39
pancreatic beta cell
21
12
pancreatic acinar cell
4
12
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