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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
100
single cell RNA-seq
98
total RNA-seq
36
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
200
Transcription
123
DNA binding
63
DNA accessibility
1
3D chromatin structure
Target of assay
114
histone
114
histone modification
62
narrow histone mark
52
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
May, 2021
72
September, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
42
August, 2017
22
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
383
bigWig
376
bam
229
fastq
200
tsv
164
bed narrowPeak
105
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
14
tagAlign
1
bed bed3
1
hic
Organism
387
Homo sapiens
Biosample type
1781
tissue
459
cell line
387
primary cell
181
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
32
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
331
AMP
45
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
444
hg19
387
GRCh38
Lab
331
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2021
BIOSAMPLE
ASSAY
387 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
pancreatic alpha cell
7
12
10
13
pancreatic beta cell
7
12
10
10
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
pancreatic endocrine cell
23
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