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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
863
total RNA-seq
643
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
885
Transcription
643
DNA binding
245
DNA accessibility
17
DNA methylation
Target of assay
407
histone modification
406
histone
221
narrow histone mark
185
broad histone mark
153
control
83
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1790
bam
1669
bigWig
1038
tsv
919
bed narrowPeak
497
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1783
Homo sapiens
Biosample type
1790
tissue
577
cell line
460
primary cell
206
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
393
pancreas
288
liver
226
brain
114
limb
87
blood vessel
87
vasculature
75
kidney
74
heart
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1788
AMP
2
T1D
Genome assembly (visualization)
1601
GRCh38
1546
hg19
Lab
1765
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
April, 2019
BIOSAMPLE
ASSAY
1790 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
230
30
1
38
6
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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