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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
66
ChIP-seq
39
ATAC-seq
27
DNase-seq
13
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
107
Transcription
66
DNA accessibility
66
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
53
histone
53
histone modification
30
broad histone mark
23
narrow histone mark
7
RNA binding protein
7
transcription factor
6
control
Date released
92
August, 2021
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
May, 2021
Available data
126
bed narrowPeak
109
tsv
108
bigWig
74
bam
42
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
254
Homo sapiens
Biosample type
254
tissue
66
cell line
13
primary cell
Organ
547
connective tissue
488
adipose tissue
468
pancreas
361
liver
276
kidney
265
brain
254
heart
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
254
AMP
Genome assembly (visualization)
143
GRCh38
64
hg19
Lab
214
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
May, 2021
April, 2019
BIOSAMPLE
ASSAY
254 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
left cardiac atrium
18
40
1
coronary artery
5
36
2
1
heart left ventricle
18
2
3
3
4
1
1
1
heart
1
5
18
4
1
1
1
right cardiac atrium
18
6
1
1
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