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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
712
ChIP-seq
244
ATAC-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
20
pCHi-C
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
712
DNA binding
450
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
May, 2021
Available data
833
bed narrowPeak
806
bam
703
bigWig
514
bigBed narrowPeak
274
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
Organism
1320
Homo sapiens
Biosample type
1329
tissue
504
cell line
469
primary cell
202
in vitro differentiated cells
8
stem cell
Organ
211
pancreas
198
heart
182
liver
180
kidney
159
brain
96
bone element
94
blood vessel
94
vasculature
88
adipose tissue
88
connective tissue
75
musculature of body
50
limb
43
artery
30
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
1296
AMP
23
T1D
10
LungMap
Genome assembly (visualization)
788
GRCh38
682
hg19
Lab
1127
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
October, 2019
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1329 results
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table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
140
20
2
3
1
1
1
islet of Langerhans
50
55
1
7
3
1
1
4
kidney
23
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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