Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
41
ATAC-seq
31
DNase-seq
19
total RNA-seq
4
small RNA-seq
2
pCHi-C
2
single cell RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
237
DNA binding
73
DNA accessibility
25
Transcription
1
DNA methylation
Target of assay
204
histone
204
histone modification
120
narrow histone mark
84
broad histone mark
32
control
1
RNA binding protein
1
transcription factor
Date released
112
October, 2019
82
November, 2017
36
February, 2023
33
May, 2019
27
June, 2019
16
October, 2017
14
February, 2020
12
July, 2019
2
August, 2021
2
March, 2020
2
November, 2018
Available data
260
bam
254
bed narrowPeak
229
bigWig
141
bigBed narrowPeak
118
tagAlign
40
bed broadPeak
31
bed bed3+
31
bigBed broadPeak
27
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
338
Homo sapiens
Biosample type
338
tissue
66
cell line
23
primary cell
Organ
547
connective tissue
488
adipose tissue
468
pancreas
361
liver
311
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
338
AMP
Genome assembly (visualization)
265
GRCh38
170
hg19
Lab
338
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
May, 2021
BIOSAMPLE
ASSAY
338 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
small RNA-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
RRBS
tissue
coronary artery
5
36
2
1
brain
20
1
14
1
1
tibial artery
23
1
2
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 80 more…
See all biosamples
Download