Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
92
ChIP-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
111
Transcription
92
DNA binding
4
3D chromatin structure
3
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
83
control
9
transcription factor
3
histone
3
histone modification
3
nucleotide modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
82
February, 2021
66
November, 2017
30
August, 2021
May, 2021
15
October, 2019
10
March, 2020
8
January, 2019
6
February, 2023
6
November, 2020
5
November, 2018
4
November, 2019
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
October, 2022
Available data
577
bam
517
bigWig
427
fastq
bed narrowPeak
355
bigBed narrowPeak
115
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
234
Homo sapiens
Biosample type
1753
tissue
714
primary cell
238
cell line
135
in vitro differentiated cells
8
stem cell
Organ
93
liver
54
artery
54
blood vessel
54
heart
54
vasculature
51
pancreas
44
epithelium
11
kidney
8
embryo
7
blood
7
bodily fluid
1
mammary gland
Project
229
AMP
7
T1D
2
community
Genome assembly (visualization)
126
hg19
102
GRCh38
Lab
205
AMP-T2D consortium
20
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
51
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
238 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
14
71
2
2
2
1
1
smooth muscle cell of the coronary artery
52
2
EndoC_BH1
29
2
6
1
2
3
2
2
1
H1-hESC
8
Panc1
7
1
+ See 14 more…
See all biosamples
Download