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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
50
ChIP-seq
16
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
54
Transcription
50
DNA binding
16
DNA accessibility
4
3D chromatin structure
Target of assay
31
control
14
histone
14
histone modification
9
broad histone mark
5
narrow histone mark
5
transcription factor
Date released
May, 2021
26
February, 2021
25
August, 2017
23
February, 2018
17
August, 2021
14
February, 2023
9
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
206
bam
170
bigWig
141
fastq
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
135
Homo sapiens
Biosample type
1753
tissue
714
primary cell
238
cell line
135
in vitro differentiated cells
8
stem cell
Organ
51
connective tissue
13
embryo
3
epithelium
1
adipose tissue
1
liver
Project
135
AMP
Genome assembly (visualization)
82
hg19
58
GRCh38
4
hg18
Lab
132
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
37
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
month_released!
May, 2021
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
135 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
5
25
7
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
pancreatic endoderm
4
6
1
cardiomyocytes (cardiac muscle cell)
2
2
2
2
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