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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
64
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
137
DNA binding
74
DNA accessibility
Target of assay
125
histone
125
histone modification
68
broad histone mark
57
narrow histone mark
12
transcription factor
8
RNA binding protein
Date released
49
August, 2017
46
September, 2018
40
October, 2018
31
November, 2019
18
May, 2022
7
October, 2019
5
September, 2017
4
June, 2019
4
October, 2017
3
March, 2020
May, 2021
3
November, 2018
1
May, 2019
Available data
645
bam
580
bigWig
471
fastq
377
tsv
211
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
205
Homo sapiens
Biosample type
123
tissue
68
primary cell
20
cell line
Organ
441
liver
211
pancreas
203
brain
183
kidney
151
heart
148
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
208
AMP
3
T1D
Genome assembly (visualization)
209
hg19
185
GRCh38
Lab
193
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
Audit category:
33
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
20
37
1
1
body of pancreas
26
4
4
pancreas
13
2
1
endocrine pancreas
14
primary cell
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
pancreatic acinar cell
8
5
pancreatic alpha cell
7
6
pancreatic endocrine cell
11
cell line
EndoC_BH1
12
1
Panc1
6
1
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