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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
DNase-seq
27
ChIP-seq
5
total RNA-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
70
DNA accessibility
27
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
7
recombinant protein
7
transcription factor
Date released
68
June, 2019
18
April, 2019
14
October, 2019
3
July, 2019
Available data
161
bed narrowPeak
113
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
103
Homo sapiens
Biosample type
91
tissue
primary cell
12
cell line
Organ
611
liver
537
connective tissue
423
adipose tissue
388
pancreas
211
heart
202
brain
126
blood vessel
126
vasculature
103
kidney
91
limb
83
artery
61
epithelium
58
bone element
57
musculature of body
55
blood
55
bodily fluid
31
nerve
27
embryo
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
103
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
103
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
month_released!
May, 2021
biosample_type!
primary cell
BIOSAMPLE
ASSAY
103 results
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DNase-seq
ChIP-seq
total RNA-seq
FAIRE-seq
small RNA-seq
tissue
kidney
13
20
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
cell line
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
glomerular visceral epithelial cell
1
1
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