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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
ChIP-seq
DNase-seq
4
pCHi-C
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
3
June, 2019
1
February, 2020
1
July, 2019
Available data
29
bed narrowPeak
5
tsv
3
bam
2
bigBed narrowPeak
2
bigWig
1
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
53
tissue
4
primary cell
Organ
873
pancreas
754
liver
673
connective tissue
489
adipose tissue
479
epithelium
360
heart
271
kidney
254
brain
225
vasculature
221
blood vessel
158
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
35
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
30
hg19
2
GRCh38
Lab
57
AMP-T2D consortium
month_released!
May, 2021
lab.title!
Bing Ren, UCSD
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
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