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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
total RNA-seq
75
ChIP-seq
9
ATAC-seq
9
DNase-seq
4
single cell RNA-seq
3
small RNA-seq
2
WGBS
1
Hi-C
Assay category
473
Transcription
75
DNA binding
18
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
40
transcription factor
35
histone
35
histone modification
18
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
450
February, 2021
65
August, 2017
17
July, 2019
15
June, 2019
5
November, 2020
5
October, 2018
3
October, 2019
2
April, 2018
2
August, 2021
2
July, 2018
1
January, 2018
May, 2021
1
November, 2018
1
October, 2017
Available data
592
bam
569
bigWig
477
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
569
Homo sapiens
Biosample type
481
tissue
56
in vitro differentiated cells
32
primary cell
Organ
608
liver
580
pancreas
569
connective tissue
425
adipose tissue
292
epithelium
222
brain
221
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
27
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
569
AMP
Genome assembly (visualization)
566
hg19
561
GRCh38
Lab
567
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
May, 2021
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
569 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue
381
1
2
2
bone tissue
58
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
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in vitro differentiated cells
adipocyte
4
47
3
1
osteoblast
1
primary cell
osteoblast
5
1
1
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
4
brain pericyte
1
1
+ See 6 more…
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