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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
140
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
79
histone
79
histone modification
39
broad histone mark
39
narrow histone mark
31
transcription factor
30
control
4
RNA binding protein
2
chromatin remodeller
Date released
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
28
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
191
bam
156
bigWig
126
fastq
113
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
247
Homo sapiens
Biosample type
2372
tissue
868
primary cell
247
in vitro differentiated cells
234
cell line
10
stem cell
Organ
96
connective tissue
27
embryo
19
epithelium
liver
1
adipose tissue
Project
247
AMP
Genome assembly (visualization)
194
hg19
167
GRCh38
4
hg18
Lab
240
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
47
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2021
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
liver
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
definitive endodermal cell
8
2
1
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