Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
STARR-seq
4
ChIP-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
Transcription
4
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
12
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
14
Homo sapiens
Biosample type
11
cell line
3
tissue
Organ
8
liver
3
pancreas
2
kidney
Project
14
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
846
AMP-T2D consortium
137
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
month_released!
May, 2021
assay_slims!
Transcription
files.file_type!
bigWig
BIOSAMPLE
ASSAY
14 results
search-icon
table-tab-icon
Clear Filters
STARR-seq
ChIP-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
2
4
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
Download