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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
79
total RNA-seq
18
ChIP-seq
11
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
1
whole genome sequencing assay
Assay category
102
DNA accessibility
90
Transcription
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
164
August, 2021
40
May, 2022
14
May, 2023
2
March, 2019
Available data
98
bed narrowPeak
64
xls
57
txt
34
bigWig
10
tsv
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
220
Homo sapiens
Biosample type
186
tissue
34
cell line
Organ
144
kidney
71
liver
4
pancreas
Project
220
AMP
Genome assembly (visualization)
76
GRCh38
38
hg19
Lab
3748
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
108
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
May, 2021
BIOSAMPLE
ASSAY
220 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
1
liver
20
20
islet of Langerhans
1
1
2
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
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