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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
21
ATAC-seq
18
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
39
Transcription
31
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
40
May, 2022
36
August, 2021
19
April, 2020
2
March, 2019
Available data
34
bed narrowPeak
34
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
96
Homo sapiens
Biosample type
63
tissue
34
cell line
Organ
71
liver
19
lung
4
pancreas
2
kidney
Project
78
AMP
19
LungMap
Genome assembly (visualization)
37
hg19
1
GRCh38
Lab
3748
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
108
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
May, 2021
BIOSAMPLE
ASSAY
97 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
lung
10
9
islet of Langerhans
1
1
2
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
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