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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
total RNA-seq
30
ATAC-seq
18
ChIP-seq
18
snATAC-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
whole genome sequencing assay
Assay category
66
Transcription
48
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
May, 2021
45
May, 2020
36
August, 2021
24
May, 2022
23
February, 2023
16
January, 2021
2
March, 2019
Available data
69
bam
59
bigWig
55
tsv
32
bed narrowPeak
24
fastq
6
txt
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
146
Homo sapiens
Biosample type
54
tissue
53
primary cell
39
cell line
Organ
54
pancreas
31
liver
8
blood
8
bodily fluid
2
kidney
Project
84
T1D
62
AMP
Genome assembly (visualization)
80
hg19
46
GRCh38
Lab
3748
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
108
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
May, 2021
BIOSAMPLE
ASSAY
146 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
whole genome sequencing assay
tissue
islet of Langerhans
12
30
6
2
pancreas
4
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
See all biosamples
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