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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
18
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
47
DNA accessibility
Date released
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
18
bam
18
bed narrowPeak
18
fastq
Organism
52
Homo sapiens
Biosample type
39
tissue
8
primary cell
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
Project
34
T1D
18
AMP
Genome assembly (visualization)
18
hg19
Lab
2395
AMP-T2D consortium
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
May, 2021
assay_slims!
Transcription
BIOSAMPLE
ASSAY
52 results
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ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
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