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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
18
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
48
DNA accessibility
Date released
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
1
October, 2017
Available data
19
fastq
18
bam
18
bed narrowPeak
1
bed broadPeak
1
bigWig
Organism
53
Homo sapiens
Biosample type
40
tissue
8
primary cell
5
cell line
Organ
40
pancreas
8
blood
8
bodily fluid
Project
34
T1D
19
AMP
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
2395
AMP-T2D consortium
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
May, 2021
assay_slims!
Transcription
BIOSAMPLE
ASSAY
53 results
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ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
30
6
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
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