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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
18
snATAC-seq
11
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
47
DNA accessibility
11
Transcription
Date released
May, 2021
24
May, 2022
23
February, 2023
16
January, 2021
Available data
69
bam
45
bigWig
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
63
Homo sapiens
Biosample type
50
tissue
8
primary cell
5
cell line
Organ
50
pancreas
8
blood
8
bodily fluid
Project
39
T1D
24
AMP
Genome assembly (visualization)
18
hg19
Lab
2382
AMP-T2D consortium
318
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
63
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
May, 2021
files.file_type!
tsv
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
snATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
11
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
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