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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
52
total RNA-seq
32
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
54
Transcription
33
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
38
August, 2021
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
August, 2018
Available data
206
bam
165
bigWig
140
fastq
123
bed narrowPeak
52
tsv
34
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
254
Homo sapiens
Biosample type
2387
tissue
594
cell line
501
primary cell
254
in vitro differentiated cells
8
stem cell
Organ
91
connective tissue
27
embryo
19
epithelium
15
liver
Project
254
AMP
Genome assembly (visualization)
201
hg19
181
GRCh38
4
hg18
Lab
254
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
46
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2021
August, 2018
BIOSAMPLE
ASSAY
254 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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