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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ATAC-seq
184
single cell RNA-seq
179
total RNA-seq
158
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
6
Hi-C
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
363
Transcription
275
DNA accessibility
158
DNA binding
48
DNA methylation
6
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
442
bam
420
bigWig
409
fastq
200
tsv
168
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
851
Homo sapiens
Biosample type
2660
tissue
851
primary cell
641
cell line
262
in vitro differentiated cells
10
stem cell
Organ
393
epithelium
346
pancreas
32
vasculature
30
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
Project
473
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
413
hg19
369
GRCh38
Lab
473
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2021
July, 2019
BIOSAMPLE
ASSAY
851 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
FAIRE-seq
RRBS
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
13
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
13
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
8
1
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