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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
50
total RNA-seq
33
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
52
Transcription
34
DNA accessibility
2
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
202
bam
166
bigWig
141
fastq
125
bed narrowPeak
50
tsv
34
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
254
Homo sapiens
Biosample type
2495
tissue
845
primary cell
611
cell line
254
in vitro differentiated cells
10
stem cell
Organ
94
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
254
AMP
Genome assembly (visualization)
200
hg19
177
GRCh38
4
hg18
Lab
247
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
41
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2021
June, 2018
October, 2019
BIOSAMPLE
ASSAY
254 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
6
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
18
hepatocyte
15
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