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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
15
ChIP-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
4
total RNA-seq
2
Capture-C
2
single cell RNA-seq
Assay category
20
DNA accessibility
15
DNA binding
6
Transcription
4
3D chromatin structure
Target of assay
13
histone
13
histone modification
9
broad histone mark
4
narrow histone mark
2
control
Date released
May, 2021
16
February, 2023
14
August, 2017
6
March, 2020
5
August, 2021
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
bam
170
bigWig
141
fastq
127
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
56
Homo sapiens
Biosample type
868
tissue
422
primary cell
64
cell line
56
in vitro differentiated cells
7
stem cell
Organ
38
connective tissue
1
adipose tissue
1
embryo
Project
56
AMP
Genome assembly (visualization)
28
hg19
4
hg18
Lab
49
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
2
audit script error
month_released!
May, 2021
files.file_type!
bam
BIOSAMPLE
ASSAY
56 results
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ATAC-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
total RNA-seq
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
8
14
1
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
embryonic stem cell
1
1
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