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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
154
single cell RNA-seq
153
ChIP-seq
148
ATAC-seq
35
snATAC-seq
28
DNase-seq
10
Hi-C
9
RRBS
6
WGBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
344
Transcription
212
DNA accessibility
153
DNA binding
15
DNA methylation
10
3D chromatin structure
Target of assay
117
histone
117
histone modification
61
narrow histone mark
56
broad histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
34
October, 2019
26
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
448
bam
432
bigWig
409
fastq
214
tsv
162
bed narrowPeak
103
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
19
zippedFastqFolder
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
735
Homo sapiens
Biosample type
2360
tissue
735
primary cell
575
cell line
262
in vitro differentiated cells
10
stem cell
Organ
326
epithelium
266
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
491
AMP
190
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
434
hg19
377
GRCh38
Lab
491
AMP-T2D consortium
190
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2021
May, 2022
organ_slims!
heart
BIOSAMPLE
ASSAY
735 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
RRBS
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
12
13
13
1
6
Langerhans cell
52
27
pancreatic beta cell
21
12
13
10
1
exocrine cell
39
pancreatic ductal cell
4
10
13
4
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