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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ATAC-seq
212
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
1716
Transcription
1653
DNA binding
772
DNA accessibility
96
DNA methylation
32
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
May, 2021
33
October, 2019
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
453
bed narrowPeak
350
bam
345
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
771
Homo sapiens
Biosample type
450
tissue
275
primary cell
33
in vitro differentiated cells
14
cell line
Organ
163
kidney
137
pancreas
106
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
33
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
636
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
409
hg19
402
GRCh38
Lab
507
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
29
audit script error
23
inconsistent ontology term
1
inconsistent replicate
month_released!
May, 2021
November, 2019
BIOSAMPLE
ASSAY
772 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
49
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 59 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
2
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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