Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
total RNA-seq
75
ChIP-seq
74
single cell RNA-seq
72
ATAC-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
7
Hi-C
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
418
Transcription
83
DNA accessibility
75
DNA binding
53
DNA methylation
7
3D chromatin structure
Target of assay
50
control
24
histone
24
histone modification
14
narrow histone mark
10
broad histone mark
6
transcription factor
5
nucleotide modification
1
RNA binding protein
Date released
157
July, 2018
139
August, 2017
86
May, 2022
May, 2021
56
February, 2023
39
April, 2018
32
February, 2021
26
September, 2018
November, 2019
19
September, 2020
13
October, 2018
11
March, 2020
11
October, 2019
10
November, 2020
8
January, 2021
7
August, 2020
6
July, 2019
6
September, 2017
5
March, 2019
4
August, 2021
4
November, 2018
3
August, 2018
3
October, 2022
1
August, 2022
1
February, 2020
1
June, 2018
1
May, 2019
1
October, 2017
Available data
592
bam
549
bigWig
471
fastq
357
tsv
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
5
bedpe bed3+
5
hic
3
cool
1
bedpe
1
hdf5
Organism
648
Homo sapiens
Biosample type
325
tissue
278
primary cell
47
cell line
Organ
650
pancreas
607
connective tissue
478
adipose tissue
350
liver
346
epithelium
199
heart
171
kidney
150
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
21
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
468
AMP
152
HPAP
30
T1D
Genome assembly (visualization)
387
GRCh38
384
hg19
Lab
448
AMP-T2D consortium
152
Klaus Kaestner, Upenn
32
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
43
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
May, 2021
November, 2019
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
650 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
229
30
21
7
4
2
1
body of pancreas
3
9
2
2
pancreas
1
3
2
4
1
1
1
endocrine pancreas
2
primary cell
pancreatic alpha cell
52
6
12
29
31
1
pancreatic beta cell
21
6
12
16
16
1
pancreatic acinar cell
4
12
4
1
pancreatic ductal cell
4
10
pancreatic endocrine cell
12
+ See 5 more…
cell line
EndoC_BH1
28
2
6
2
1
Panc1
7
1
See all biosamples
Download