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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
56
Transcription
DNA accessibility
Date released
May, 2021
45
May, 2020
10
February, 2023
6
May, 2022
Available data
51
bam
45
bigWig
45
tsv
6
fastq
6
txt
Organism
61
Homo sapiens
Biosample type
45
primary cell
11
tissue
5
cell line
Organ
11
pancreas
Project
55
T1D
6
AMP
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
3215
AMP-T2D consortium
171
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
61
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
4
inconsistent ontology term
month_released!
May, 2021
September, 2020
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
61 results
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total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
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tissue
islet of Langerhans
11
cell line
EndoC_BH1
3
2
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