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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
155
ChIP-seq
48
snATAC-seq
47
WGBS
10
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
381
Transcription
240
DNA accessibility
155
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
116
histone
116
histone modification
61
narrow histone mark
55
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
June, 2019
27
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
460
bam
442
bigWig
409
fastq
218
tsv
168
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
839
Homo sapiens
Biosample type
2532
tissue
839
primary cell
577
cell line
237
in vitro differentiated cells
7
stem cell
Organ
385
epithelium
346
pancreas
30
connective tissue
29
vasculature
26
kidney
25
blood vessel
20
vein
13
brain
13
musculature of body
10
heart
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
469
AMP
324
HPAP
45
T1D
1
ITG
Genome assembly (visualization)
416
hg19
357
GRCh38
Lab
469
AMP-T2D consortium
324
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2021
organ_slims!
blood
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
839 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
RRBS
Hi-C
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
exocrine cell
39
pancreatic acinar cell
4
9
12
8
1
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