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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
29
ATAC-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
56
Transcription
39
DNA accessibility
Date released
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
8
January, 2021
Available data
69
bam
45
bigWig
45
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
100
Homo sapiens
Biosample type
50
tissue
45
primary cell
5
cell line
Organ
50
pancreas
blood
8
bodily fluid
Project
76
T1D
24
AMP
Genome assembly (visualization)
63
hg19
45
GRCh38
Lab
3687
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
100
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
month_released!
May, 2021
organ_slims!
blood
BIOSAMPLE
ASSAY
100 results
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total RNA-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
11
29
6
pancreas
4
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
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cell line
EndoC_BH1
3
2
See all biosamples
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