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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
11
total RNA-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
39
DNA accessibility
11
Transcription
Date released
May, 2021
24
May, 2022
23
February, 2023
8
January, 2021
Available data
69
bam
45
bigWig
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
55
Homo sapiens
Biosample type
50
tissue
5
cell line
Organ
50
pancreas
blood
8
bodily fluid
Project
31
T1D
24
AMP
Genome assembly (visualization)
18
hg19
Lab
2321
AMP-T2D consortium
318
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
55
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
May, 2021
organ_slims!
blood
files.file_type!
tsv
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
11
6
pancreas
4
cell line
EndoC_BH1
3
2
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